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menchelab / STRING-VRNetzer

Access protein-protein association networks from STRING DB in VRNetzer
MIT License
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Create 3D network layout #2

Closed ObT1337 closed 1 year ago

ObT1337 commented 2 years ago

Create a suitable 3D Layout of the 2D network.

ObT1337 commented 2 years ago

Used networkX spring layout algorithm to create a 3D network. Imported this network to VRNetzer with multiple layouts.

  1. 2D Layout like the network would be represented in Cytoscape
  2. 3D Layout with all possible evidence links a STRING Network can have
  3. and followed: Same 3D layout but only the links for a certain evidence a shown in the color of the evidence.

    • If there is not any link for an evidence type, this one is skiped as it would result in a network with just nodes on no edges.

TODO: Create a Webpage to switch between the layouts by clicking on Labels or something like this