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mendessoares / MMinte

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Text Corrections in Case1StudyTutorial #2

Open ralbinocamacho opened 8 years ago

ralbinocamacho commented 8 years ago

-Under Widget 1: "You can check this file by going to the CaseStudy1 folder and opening the corrsFlat.txt file in any text editor. Here is what the header and first five lines of dat this file looks like:" -> --Maybe correct to this: "You can check this file by going to the CaseStudy1 folder and opening the corrs.txt file in any text editor. Here is what the header and first five lines of data in this file look like:" --also maybe say how to find the corrs.txt file: "go to the userFiles folder inside the CaseStudy1 folder"

-Resuls tab is written twice instead of Results tab

-"You can check this file by going to the CaseStudy1 folder and opening the rep_set.fna file in any text editor. Here is what this file looks like:" --I think that the file name that corresponds to this line is seqs.fasta --maybe also mention that this file is inside the userFiles folder

ralbinocamacho commented 8 years ago

-Under Widget 5: fifth bullet, change Om to On

ralbinocamacho commented 8 years ago

Widget 6

The kinds of interactions occurring between the pairs of species on the metabolic conditions defined by Widget 5 are predicted.

^^possibly add "by"?

ralbinocamacho commented 8 years ago

Under Widget 7 -layed -> laid -gree -> green

ralbinocamacho commented 8 years ago

Widget 4

Metabolic models of 2-species communities are created using COBRA Toolbox for the python computational framework (COBRApy).

Each 2-species community model takes abou 15 seconds to create. You can find all these models in the folder ../CaseStudy1/output/comModels/