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mengyao / PHMM-SNP-INDEL-caller

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PHMM can not work in somatic variants calling ? #1

Open WinterLi1993 opened 8 years ago

WinterLi1993 commented 8 years ago

HI , PHMM can not work in somatic variants calling ?

mengyao commented 8 years ago

Hi,

Thank you very much for your interests in PHMM.

Whether PHMM can do somatic variant calling depends on how would you like to use it. PHMM takes bam file as input. Ideally, the reference genome for somatic variant calling is a long contig sequenced and made from the patients' own healthy tissue.

PHMM is not actively maintained currently. It is not a finished project.

Yours,

Mengyao

On Tue, Oct 18, 2016 at 7:34 PM, DoubleWinter notifications@github.com wrote:

HI , PHMM can not work in somatic variants calling ?

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/mengyao/PHMM-SNP-INDEL-caller/issues/1, or mute the thread https://github.com/notifications/unsubscribe-auth/AAlVdImv1_dIZ3xmtJZh4Ll2gmT1OVq1ks5q1VeVgaJpZM4KaaBB .

WinterLi1993 commented 8 years ago

HI ,yao, thank you for your answer! may I ask are you a chinese ?

mengyao commented 8 years ago

Yes, I am.

Yours,

Mengyao

On Wed, Oct 19, 2016 at 12:24 AM, DoubleWinter notifications@github.com wrote:

HI ,yao, thank you for your answer! may I ask are you a chinese ?

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/mengyao/PHMM-SNP-INDEL-caller/issues/1#issuecomment-254707071, or mute the thread https://github.com/notifications/unsubscribe-auth/AAlVdLJ2JgXRBO6beSSdrgKPZIumFjJgks5q1ZtmgaJpZM4KaaBB .

WinterLi1993 commented 8 years ago

thank you for your answer! I sent an e-mail to you .