Closed josephtocci closed 2 years ago
When I run the import
# python3 SNPedia/DataCrawler.py -f /opt/genome.txt
I get this
page|5253393939393433|13372 122 122 ['rs7999075', 'rs878854938', 'rs587783831', 'rs796053466', 'rs121918680', 'rs34695944', 'rs202198133', 'rs193922432', 'rs4652795', 'rs10444502'] Traceback (most recent call last): File "SNPedia/DataCrawler.py", line 165, in <module> dfCrawl = SNPCrawl(rsids=rsid, filepath=filepath) File "SNPedia/DataCrawler.py", line 22, in __init__ self.importDict(filepath) File "SNPedia/DataCrawler.py", line 110, in importDict self.rsidDict = json.load(jsonfile) File "/usr/local/lib/python3.8/json/__init__.py", line 293, in load return loads(fp.read(), File "/usr/local/lib/python3.8/json/__init__.py", line 357, in loads return _default_decoder.decode(s) File "/usr/local/lib/python3.8/json/decoder.py", line 340, in decode raise JSONDecodeError("Extra data", s, end) json.decoder.JSONDecodeError: Extra data: line 1 column 670356 (char 670355)
Hi, can you check to see if your JSON file is malformed within your rsidDict.json in your data directory?
Closing due to inactivity
When I run the import
I get this