This tutorial is about using publicly genomes and metagenomes, as well as the snakemake workflows in anvi'o.
A simple story using a Prochlorococcus SAG, getting Prochlorococcus genomes from refseq, a few metagenomes from the Bermuda Atlantic Time Series. And running the contigs, pangenomics, sra_download and metagenomics workflow.
While writing it, @ivagljiva helped me by creating _includes/WORKFLOW. Now we can include links to workflows the same way we include artifacts 🎉
This tutorial is about using publicly genomes and metagenomes, as well as the snakemake workflows in anvi'o. A simple story using a Prochlorococcus SAG, getting Prochlorococcus genomes from refseq, a few metagenomes from the Bermuda Atlantic Time Series. And running the contigs, pangenomics, sra_download and metagenomics workflow. While writing it, @ivagljiva helped me by creating
_includes/WORKFLOW. Now we can include links to workflows the same way we include artifacts 🎉