Open GeoMicroSoares opened 3 years ago
I'm having a nearly identical issue. Did you ever find a solution?
Hi @GeoMicroSoares and @PChuckran , Did you manage to resolve this issue? I have the very same thing on Anvio 7 and cannot figure out where the problem is coming from.
Cheers!
Unfortunately no. I had the problem with Dastool. I ended up exporting my bins from maxbin, metabat, and concoct. I then ran dastool outside of anvi'o and imported those bins using anvi-import-collection
.
Thanks so much for your work in this tool and for this in advance - you guys are the best!
Short description of the problem
Running
anvi-cluster-contigs
withDASTool
orBinsanity
as drivers I get apython
MemoryError
.anvi'o version
Replace this text with the output of this command:
System info
Running WSL on Windows:
Anvi'o was installed via conda.
Detailed description of the issue
The error is the same, but to keep it simple and since it's the one that interests me the most I'll stick to DASTool (also happens with Binsanity). Running
anvi-cluster-contigs
as such:The command line output from that is the following:
And
/tmp/tmpbo5snwpm/logs.txt
looks like:Files to reproduce
Let me know if this is something you can't reproduce - I can share files if needed.