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merenlab / anvio

An analysis and visualization platform for 'omics data
http://merenlab.org/software/anvio
GNU General Public License v3.0
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Can I save the result of ```Displaying the pan genome```? #1519

Closed xuechunxu closed 3 years ago

xuechunxu commented 3 years ago

Hey,

When I used remote CMD tool like xshell to use Anvi'o anvi-display-pan -p PROJECT-PAN.db -g PROJECT-PAN-GENOMES.db (http://merenlab.org/2016/11/08/pangenomics-v2/) on remote server. It invoked xmanger or xming to display interactive interface. It is very slow and almost impossible to operate.

Can I save the result of Displaying the pan genome? After finish, I can download the result to my personal computer from remote server, and use browser to operate them.

meren commented 3 years ago

Hey @xuechunxu,

Please take a look at this post:

http://merenlab.org/2018/03/07/working-with-remote-interative/

I hope this helps.

Best,

xuechunxu commented 3 years ago

Looks so hard for me. It will be more better if Anvio can produce interactive file like Qiime2. Thank you very much.

meren commented 3 years ago

If you download those files (PAN.db and STORAGE.db) to your computer and run anvi-pan-genome locally to visualize the pangenome interactively.