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merenlab / anvio

An analysis and visualization platform for 'omics data
http://merenlab.org/software/anvio
GNU General Public License v3.0
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[FEATURE] anvi-get-sequences-for-functions? #1750

Open dspeth opened 3 years ago

dspeth commented 3 years ago

The need

exporting sequences annotated by KEGG/PFAM/COG/FutureAwesomeAnnotators is a useful thing. Currently there are roundabout ways of doing this, but anvi-get-sequences-for-functions would be a direct route

The solution

anvi-get-sequences-for-functions, analogous to the existing anvi-get-sequences-for-hmm-hits

Beneficiaries

potentially anyone using contigs databases for annotation & comparison across genomes

meren commented 3 years ago

Thank you for this, @dspeth. This is a great idea and I take the responsibility to propose a PR for this.

meren commented 3 years ago

We still haven't done this and it is my fault :( But I will do it at some point.