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merenlab / anvio

An analysis and visualization platform for 'omics data
http://merenlab.org/software/anvio
GNU General Public License v3.0
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[FEATURE] Anvi'o pangenomics self test is BORING! #1848

Closed matthewlawrenceklein closed 2 years ago

matthewlawrenceklein commented 2 years ago

The need

The slumbering behemoth known as Genome View currently lies dormant, its genome clustering abilities waiting silently in the wings. Meanwhile, rumblings from the current Anvio user base speak towards a common need - our pangenomics test files are boring, and we need to spice them up!

The solution

More exciting test files for Anvio's pangenomics self test

Beneficiaries

self-testers at large, but especially users of the yet-to-be-finalized genome-view self test and tutorial, who will be able to utilize Genome View's clustering features in a test environment :)

meren commented 2 years ago

There is no call we do not answer. There is no faith that we betray.

If the pangenomics self test is boring, we make it unboring (it is now brewing in #1849).

Atreides. Atreides. Atreides. Atreides. Atreides. Atreides.

matthewlawrenceklein commented 2 years ago

There is no call we do not answer. There is no faith that we betray.

If the pangenomics self test is boring, we make it unboring (it is now brewing in #1849).

Atreides. Atreides. Atreides. Atreides. Atreides. Atreides.

The self tests must flow!

meren commented 2 years ago

This is no longer the case.

Here's the screenshot of the pangenome new test yields:

image