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merenlab / anvio

An analysis and visualization platform for 'omics data
http://merenlab.org/software/anvio
GNU General Public License v3.0
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[FEATURE REQUEST] anvi-script-kofam-accessions-to-hmms-directory ? #1961

Open FlorianTrigodet opened 2 years ago

FlorianTrigodet commented 2 years ago

The need

image

The solution

Make anvi-script-kofam-accessions-to-hmms-directory. Or make anvi-script-accessions-to-hmms-directory with an option for pfam or kofam.

meren commented 2 years ago

I like anvi-script-accessions-to-hmms-directory :) The only problem is the following: while HMMs from PFAM has model noise cutoff scores built-in, HMMs from KOFams do not (I am ready to stand corrected for this though). This problem may make it more difficult to mix and match things.