Open meren opened 1 year ago
@meren thanks again for giving workflows a separate documentation infrastructure. I took a swing at this here: https://github.com/merenlab/anvio/tree/ecophylo-artifact-documentation
Should I remove the ecophylo artifact in this branch or would we keep both artifacts?
@meren can we also have an artifacts_accepted option?
This is now done, @mschecht.
@meren and/or @mschecht , is this workflow documentation all finished? Can we close this issue? :)
Let's keep this open for a little longer :)
Thank you for going through all these issues, Iva!
Thanks for the ping everyone - I'll run through my current documentation and prepare commits. I know the release timeline is tight.
Ok I made some minor adjustments but did not push the commit. Let me know if/when it's ok to push :)
Please feel free to push your commits @mschecht. It would be great if you could do it as soon as possible :)
In addition to artifacts and programs, the anvi'o docs now supports workflows following the PR #1977.
Adding a new workflow is quite straightforward, and every file that needs to be edited to add a new workflow is demonstrated in https://github.com/merenlab/anvio/pull/1977/commits/379ba4351c4aa939f7485af0b765ccded0234ed1.
Since there is already so much documentation, I think it will be quite straightforward to add the
ecophylo
workflow by @mschecht and thetrnaseq
workflow by @semiller10 into this. So I propose their addition to this system :)We also need to clean up a few things, which I will do, including,
pangenomics
andphylogenomics
workflows.contigs
,metagenomics
,pangenomics
, andphylogenomics
, so the language is smooth and aligned with the tone of the anvi'o docs.