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merenlab / anvio

An analysis and visualization platform for 'omics data
http://merenlab.org/software/anvio
GNU General Public License v3.0
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[BUG] Tidyverse Environment won't solve #2051

Closed SevanEsaian closed 1 year ago

SevanEsaian commented 1 year ago

Hello, I am trying to install anvi'o on my university's cluster. I am following the anvi'o installation guide and have encountered a problem with tidyverse. The problem is that the environment won't solve when I use the command: 

conda install -y -c bioconda r-tidyverse

I looked at a different GitHub post and also tried their suggestion

conda install -c r r-tidyverse

I still have the same problem which is that the environment won't solve. I would greatly appreciate any suggestions for installing tidyverse correctly. I have had no installation problems for any of the other packages before reaching tidyverse in the tutorial.

Thank you for your help.

FlorianTrigodet commented 1 year ago

Hi @SevanEsaian,

You can try to install tidyverse directly in R like mentioned here:

Rscript -e 'install.packages(c("stringi", "tidyverse", "magrittr", "optparse"), repos="https://cloud.r-project.org")'
kylakell commented 1 year ago

I am still having trouble with conda install -c r r-tidyverse with python 3.6 and with the Rscript above. Any further suggestions? I'm trying to install it on an hpc

metehaansever commented 1 year ago

I am still having trouble with conda install -c r r-tidyverse with python 3.6 and with the Rscript above. Any further suggestions? I'm trying to install it on an hpc

Instead of using python 3.6, you can use 3.7 with anvio-dev.

ivagljiva commented 1 year ago

This issue has been quiet for a few months, so I will close it. @kylakell or @SevanEsaian , if either of you are still having issues, please feel free to reopen this issue and give us an update :)