Closed meren closed 11 months ago
Some of the documentation was stored in files without the requisite .md
extension, but I fleshed it out a lot more with the help of your handy checklist.
I added reaction network tests to the metabolism self-test suite.
You are the absolute best, Sam. Thank you very much.
The need
For the new toys in our codebase made available through the heroic efforts of @semiller10 via #2123, we need,
The solution
Addressing the following concerns would be the best solution.
Docs
Here are some of the artifacts and programs that need love:
anvi-setup-modelseed-database
(anvio/docs/programs/anvi-setup-modelseed-database.md
, currently empty)anvi-reaction-network
(anvio/docs/programs/anvi-reaction-network.md
, currently empty)anvi-get-metabolic-model-file
(anvio/docs/programs/anvi-get-metabolic-model-file.md
, currently empty)reaction-network
(anvio/docs/artifacts/reaction-network.md
, has minimal info)reaction-network-json
(anvio/docs/artifacts/reaction-network-json.md
, has minimal info -- could use a brief example and more information regarding which flux balance analysis tools / standards it is compatible with)Component tests
anvio/tests/run_component_tests_for_metabolism.sh
may be a good place to implement them.Beneficiaries
Anvi'o users who are interested in understanding how to use these tools effectively :)