With v8 or dev version, anvi-help is not working anymore.
anvi'o version
v8 and dev version.
Detailed description of the issue
Example command:
anvi-help gene
Here is the first error:
Traceback (most recent call last):
File "/gss/work/nand5072/SOFTWARE/anvio/bin/anvi-help", line 35, in <module>
TABLE_BG = back.GREY_11
AttributeError: 'function' object has no attribute 'GREY_11'
This is an error I can fix. The package colored has changed a little bit and all 'back', 'fore' and 'style' need to be replaced with a capital letter: 'Back', 'Fore', 'Style'.
But even when I fix this issue, I have a new error and I don't know what's happening:
Traceback (most recent call last):
File "/Users/fltrig002/github/anvio/bin/anvi-help", line 5, in <module>
from anvio.argparse import ArgumentParser
File "/Users/fltrig002/github/anvio/anvio/argparse.py", line 7, in <module>
import argparse
File "/Users/fltrig002/github/anvio/anvio/argparse.py", line 11, in <module>
from rich_argparse import RichHelpFormatter
File "/Users/fltrig002/miniconda3/envs/anvio-dev/lib/python3.10/site-packages/rich_argparse/__init__.py", line 25, in <module>
class RichHelpFormatter(argparse.HelpFormatter):
AttributeError: partially initialized module 'argparse' has no attribute 'HelpFormatter' (most likely due to a circular import)
Short description of the problem
With v8 or dev version,
anvi-help
is not working anymore.anvi'o version
v8 and dev version.
Detailed description of the issue
Example command:
Here is the first error:
This is an error I can fix. The package colored has changed a little bit and all 'back', 'fore' and 'style' need to be replaced with a capital letter: 'Back', 'Fore', 'Style'.
But even when I fix this issue, I have a new error and I don't know what's happening: