search

merenlab / anvio

An analysis and visualization platform for 'omics data
http://merenlab.org/software/anvio
GNU General Public License v3.0
415 stars 142 forks source link

[BUG] anvi-script-augustus-output-to-external-gene-calls 0 gens parsed #2150

Open mloberme opened 9 months ago

mloberme commented 9 months ago

Short description of the problem

I only have Augustus output in .gtf form, when using the script I get 0 gens parsed.

anvi'o version

Anvio 8

anvi-self-test --version

System info

Linux Conda installation

Detailed description of the issue

Hi I am having trouble with my Augustus output. I only have a .gtf, because it is part of the Braker3 pipeline. Does the format work with this script? When I try to run it I get: Num genes parsed 0 and an empty file.