merenlab / anvio

An analysis and visualization platform for 'omics data
http://merenlab.org/software/anvio
GNU General Public License v3.0
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No "load bin collection" button #2178

Closed magueos closed 7 months ago

magueos commented 7 months ago

Short description of the problem

anvio interactive interface does not have the "load bin collection" button

anvi'o version

anvio-8

anvi-self-test --version

System info

I am using linux as OS and the program was installed by following the instructions of the website

Detailed description of the issue

I am trying to curate some bins from my metagenomic data and everything seems to work good. In order to curate them I am using the command line "anvi-refine":

anvi-refine -c Pul_bin_contigs.db -p ./Pulque/PROFILE.db -C PulMETATOR -b MetaTOR_4_1

but the button "load bin collection" from the bins sections is not showing up, as well as the store bin collection. All I have is "Load state" / "Save state"

I am following your tutoral https://merenlab.org/2017/01/03/loki-the-link-archaea-eukaryota/ so I dont know if there is something wrong with this interface or if its an actualization from the program

Files / commands to reproduce the issue

Having reproducible files can help us a lot to fix an issue. So please consider sharing with us files to reproduce the issue (i.e., a contigs database, a profile database, an input file, a BAM file, etc).

Put them in a single directory, compress the directory, upload it to Dropbox (or any other comparable service), and replace the text here with with a direct download link along with instructions, such as exact command line instructions, on how to reproduce the error.

If you don't have files to share, please remove this section along with the header.

meren commented 7 months ago

The interface changed quite a bit since those times. anvi-refine does not have a load / save bin collection buttons anymore. Instead, it has this:

image

Once you are satisfied with your selections, you use that button to split the bin(s) being refined as new bins based on your selections. Any contig that is not selected into a bin prior to that is discarded and not included in any bin.