UI improvements

[metehaansever]

PLESE DO NOT MERGE This PR to see the latest changes before writing to the master.

[meren]

I just realized that clicking on "Generate a static summary page" button while working with a pangenomes result in the following error:

Same occurs with the regular interactive (i.e., with infant gut dataset).

At the root of this issue lies the broken symlinks that look like this,

which obviously only work for your computer, instead of relative ones that would work for everyone :) I hope you can fix the symlinks when you have a chance.

[metehaansever]

I just realized that clicking on "Generate a static summary page" button while working with a pangenomes result in the following error:

Same occurs with the regular interactive (i.e., with infant gut dataset).

At the root of this issue lies the broken symlinks that look like this,

which obviously only work for your computer, instead of relative ones that would work for everyone :) I hope you can fix the symlinks when you have a chance.

Thank you for catching that @meren !! i'll fix it :+1:

[meren]

Thanks for 28721b5ac763da7beba2ca260b94b60ad59e4eaa, Mete, but there are more:

/Users/meren/github/anvio/anvio/data/static/content/pics/logo-simple.png -> /home/msever/github/anvio/anvio/data/interactive/images/logo-simple.png

Please make sure anvi-summarize works for metagenomes and pangenomes.

[meren]

I also can see that bootstrap glyphicons no longer render. I'm not sure why :/

[meren]

Another point: While going through which new files this PR brings into main, I realized we have a new directory for Roboto fonts (where we literally add roboto fonts to anvi'o codebase). But when I checkout the repository from https://github.com/googlefonts/roboto, the repo seems to have all the files we need:

./src/hinted/Roboto-Medium.ttf
./src/hinted/Roboto-Light.ttf
./src/hinted/RobotoCondensed-Bold.ttf
./src/hinted/RobotoCondensed-Light.ttf
./src/hinted/Roboto-Regular.ttf
./src/hinted/Roboto-MediumItalic.ttf
./src/hinted/RobotoCondensed-Italic.ttf
./src/hinted/RobotoCondensed-BoldItalic.ttf
./src/hinted/RobotoCondensed-LightItalic.ttf
./src/hinted/Roboto-ThinItalic.ttf
./src/hinted/RobotoCondensed-Regular.ttf
./src/hinted/Roboto-BoldItalic.ttf
./src/hinted/Roboto-LightItalic.ttf
./src/hinted/Roboto-Italic.ttf
./src/hinted/Roboto-BlackItalic.ttf
./src/hinted/Roboto-Bold.ttf
./src/hinted/Roboto-Thin.ttf
./src/hinted/Roboto-Black.ttf

Would it not have been better to add roboto as a submodule like everything else under lib?

[metehaansever]

I also can see that bootstrap glyphicons no longer render. I'm not sure why :/

I fixed that :)

[metehaansever]

Another point: While going through which new files this PR brings into main, I realized we have a new directory for Roboto fonts (where we literally add roboto fonts to anvi'o codebase). But when I checkout the repository from https://github.com/googlefonts/roboto, the repo seems to have all the files we need:

./src/hinted/Roboto-Medium.ttf
./src/hinted/Roboto-Light.ttf
./src/hinted/RobotoCondensed-Bold.ttf
./src/hinted/RobotoCondensed-Light.ttf
./src/hinted/Roboto-Regular.ttf
./src/hinted/Roboto-MediumItalic.ttf
./src/hinted/RobotoCondensed-Italic.ttf
./src/hinted/RobotoCondensed-BoldItalic.ttf
./src/hinted/RobotoCondensed-LightItalic.ttf
./src/hinted/Roboto-ThinItalic.ttf
./src/hinted/RobotoCondensed-Regular.ttf
./src/hinted/Roboto-BoldItalic.ttf
./src/hinted/Roboto-LightItalic.ttf
./src/hinted/Roboto-Italic.ttf
./src/hinted/Roboto-BlackItalic.ttf
./src/hinted/Roboto-Bold.ttf
./src/hinted/Roboto-Thin.ttf
./src/hinted/Roboto-Black.ttf

Would it not have been better to add roboto as a submodule like everything else under lib?

That's correct Meren, i did that to be sure we will have Roboto font for static pages. But this way would be better for sure.

[metehaansever]

I removed fonts/roboto directory and create submodule for Roboto font. Also i created symlink for static pages. @meren