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merenlab / anvio

An analysis and visualization platform for 'omics data
http://merenlab.org/software/anvio
GNU General Public License v3.0
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Anvio-server - failed to process a project #291

Closed tdelmont closed 8 years ago

tdelmont commented 8 years ago

Hi, on my first test with the anvio-server, the project I created failed to load on the interactive interface. Here is the error code:

screen shot 2016-01-27 at 10 07 18 am

PS: my id is "tdelmont", code is "test", and project name is "Soil microcosms - Pangenomics"

paczian commented 8 years ago

Hey Tom,

I updated the code and restarted the server. The error is that it is expecting a FASTA file and does not have one. If the FASTA file is optional now, there need to be some minor changes to the code to not break at that point.

Cheers Tobi

On 27 Jan 2016, at 10:10, Tom Delmont notifications@github.com wrote:

Hi, on my first test with the anvio-server, the project I created failed to load on the interactive interface Here is the error code:

https://camo.githubusercontent.com/3da8e2e445c0f53cb6b26b67d3738eaa6b647382/68747470733a2f2f636c6f756467697468756275736572636f6e74656e74636f6d2f6173736574732f383333323838392f31323631393531372f66653036343064362d633464642d313165352d396131312d376237613162356566383332706e67 PS: my id is "tdelmont", code is "test", and project name is "Soil microcosms - Pangenomics"

— Reply to this email directly or view it on GitHub https://github.com/meren/anvio/issues/291.

paczian commented 8 years ago

I have deleted the empty fasta file in that project and now you should be able to view it. The line that calls touch fastaFile in bottleroutes_multi needs to be removed.

On 27 Jan 2016, at 10:10, Tom Delmont notifications@github.com wrote:

Hi, on my first test with the anvio-server, the project I created failed to load on the interactive interface Here is the error code:

https://camo.githubusercontent.com/3da8e2e445c0f53cb6b26b67d3738eaa6b647382/68747470733a2f2f636c6f756467697468756275736572636f6e74656e74636f6d2f6173736574732f383333323838392f31323631393531372f66653036343064362d633464642d313165352d396131312d376237613162356566383332706e67 PS: my id is "tdelmont", code is "test", and project name is "Soil microcosms - Pangenomics"

— Reply to this email directly or view it on GitHub https://github.com/meren/anvio/issues/291.

paczian commented 8 years ago

Ah, I was wrong, this had already been changed. So if you create a new project without a fasta file it will just work. This was only due to the code not being up to date.

On 27 Jan 2016, at 10:41, Tobias Paczian tobiaspaczian@googlemail.com wrote:

I have deleted the empty fasta file in that project and now you should be able to view it. The line that calls touch fastaFile in bottleroutes_multi needs to be removed.

On 27 Jan 2016, at 10:10, Tom Delmont <notifications@github.com mailto:notifications@github.com> wrote:

Hi, on my first test with the anvio-server, the project I created failed to load on the interactive interface Here is the error code:

https://camo.githubusercontent.com/3da8e2e445c0f53cb6b26b67d3738eaa6b647382/68747470733a2f2f636c6f756467697468756275736572636f6e74656e74636f6d2f6173736574732f383333323838392f31323631393531372f66653036343064362d633464642d313165352d396131312d376237613162356566383332706e67 PS: my id is "tdelmont", code is "test", and project name is "Soil microcosms - Pangenomics"

— Reply to this email directly or view it on GitHub https://github.com/meren/anvio/issues/291.