Closed jarrodscott closed 7 years ago
Good catch! Thanks for this. I am curious whether this is an issue in the new workflow I've been cooking in another branch. I'll look into this.
Best,
This should be fixed in the master :)
The next release will be much better for working with pangenomes!
Thank you,
Just an FYI--running anvi-pan-genome command on some low completion SAGs. Kept getting this error and traced it to an especially incomplete genome. When this genome is removed command proceeds as normal. I looked and the genome appears to only have 2 single copy genes and only 155 total genes--should be removed anyway :). Perhaps I missed some flag for the command but here is the Traceback. Log file also attached
log.txt