Closed dot4822 closed 7 years ago
(this is now resolved in the development branch and will be in the next release)
Simply you will use this command to export splits instead of contigs from a single contigs database:
anvi-export-contigs -c contigs.db -o output.fa --splits-mode
:)
Hi Meren,
I went through your tutorial and found that the 'anvi-export-splits-and-coverages' can only be used on merged database. Since the BAM profiling step takes long time, and my target is only to get splits cut up by ANVIO, I would like to know whether it is possible that you can add a new script to export fasta file of splits before BAM profiling step.
Regards, Dot