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merenlab / anvio

An analysis and visualization platform for 'omics data
http://merenlab.org/software/anvio
GNU General Public License v3.0
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Error installing Anvi'o: pip install numpy fails inside virtual environment #571

Closed tberben closed 7 years ago

tberben commented 7 years ago

I am trying to install Anvi'o on the linux server at my institute using the instructions in the Anvi'o manual. I cloned the git codebase and, using Python 3.4, created the virtual environment using python -m venv ~/virtualenv/anvio followed by source ~/virtualenv/anvio/bin/activate. So far so good, but when I change directory to ~/virtualenv/anvio and run pip install -r requirements.txt I get a string of exceptions while it's installing NumPy that I have trouble interpreting and solving. The pip.log file is attached.

I have tried deleting the directory completely and starting anew, but the problem persists.

pip.txt

meren commented 7 years ago

Hi @tberben,

To me this seems like a Python related issue. Please upgrade your Python to 3.6.* and try again.

Best,