Closed JBuongio closed 6 years ago
In general the default temp directories anvi'o uses can be overwritten by TMPDIR, TEMP or TMP environment variables.
Apart from that, you shouldn't be using anvi-script-FASTA-to-contigs-db
unless you are doing a quick and dirty analysis.
Instead you can use anvi-script-reformat-fasta
, anvi-gen-contigs-database
, anvi-run-hmms
programs separately to make sure you have full control for every step (that script does it all for you in a quick way).
Hi Meren, I'm running anvi-script-FASTA-to-contigs-db on a metagenome assembly that has about 180,000 contigs and keep running out of disk space on my work station. Is there a way to change the temp dir so I don't have to fill up the local machine?
Thanks, Joy