Closed ShaiberAlon closed 5 years ago
Dear Alon,
Thank you very much for your comments. The developers are thrilled to hear that you are happy with this modest tool.
If you don't mind generating an example set, we would be happy to do our best to offer a solution.
Best wishes,
First of all, I wanted to say that this is a great tool, so I just wanted to thank the developers!
I am trying to use
iu-remove-ids-from-fastq
to remove some reads that were mapped using bowtie2, but I have the following problem: in thebam
output from the bowtie2 mapping the reads look like this:fasta_02:23:B02CBACXX:8:2315:2667:7273
Whereas, if I look at the corresponding read in the fastq file, it looks like this:
@fasta_02:23:B02CBACXX:8:2315:2667:7273 1:N:0:GATCAG
And
iu-remove-ids-from-fastq
expects:fasta_02:23:B02CBACXX:8:2315:2667:7273 1:N:0:GATCAG
Even though to my understanding the read name
fasta_02:23:B02CBACXX:8:2315:2667:7273
is unique.Could this behavior be modified?
Thank you!