search

merenlab / illumina-utils

A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).
GNU General Public License v2.0
89 stars 31 forks source link

issue with demultiplexing example #30

Closed dnolin13 closed 2 years ago

dnolin13 commented 2 years ago

Hello - I was trying to run the test example using this command:

(illumina-utils-dev) delaney@ada:~/software/illumina-utils/examples/demultiplexing$ iu-demultiplex -s barcode_to_sample.txt --r1 r1.fastq --r2 r2.fastq --index index.fastq -o output/

and get the following error:

Traceback (most recent call last): File "/home/delaney/software/illumina-utils/scripts/iu-demultiplex", line 18, in import IlluminaUtils.lib.fastqlib as u ModuleNotFoundError: No module named 'IlluminaUtils'

Any help is greatly appreciated!!

meren commented 2 years ago

HI @del-oxyribonucleic-acid, this looks like an installation issue. Please try removing everything and try to install the program again. If this is a HPC, please reach out to your sys admin for help.

Best,