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merenlab / oligotyping

Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa
GNU General Public License v2.0
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OSError: too many open files #6

Closed meren closed 12 years ago

meren commented 12 years ago

Obviously this has to change:

Traceback (most recent call last):
  File "../oligotyping/oligotyping.py", line 449, in <module>
  File "../oligotyping/oligotyping.py", line 176, in run_all
  File "../oligotyping/oligotyping.py", line 373, in _generate_representative_sequences
  File "/lib/python2.7/tempfile.py", line 447, in NamedTemporaryFile
  File "/lib/python2.7/tempfile.py", line 228, in _mkstemp_inner
OSError: [Errno 24] Too many open files: '/var/folders/-Tmp-/tmpF3yVR5'