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meringlab / FlashWeave.jl

Inference of microbial interaction networks from large-scale heterogeneous abundance data
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ArgumentError: number of rows of each array must match (got (46, 47)) #17

Closed lixiaopi1985 closed 3 years ago

lixiaopi1985 commented 3 years ago

Hi,

Thank you for developing this tool.

I ran into this error during normalization steps:

┌ Warning: 1 factor variable with more than two categories were detected (cul_type), splitting it into separate dummy variables (One Hot) └ @ FlashWeave C:\Users\Xiaoping.julia\packages\FlashWeave\16aV0\src\preprocessing.jl:63 ┌ Warning: adaptive pseudo-counts for 1 samples were lower than machine precision due to insufficient counts, removing them └ @ FlashWeave C:\Users\Xiaoping.julia\packages\FlashWeave\16aV0\src\preprocessing.jl:125

ArgumentError: number of rows of each array must match (got (46, 47)).

Just wondering if the program should have taken care of it internally?

my code for running: learn_network(otu, meta, sensitive=true, heterogeneous=false, normalize=true, alpha=0.05, FDR=true)

Thanks

jtackm commented 3 years ago

Thanks for the report and sorry for the delay, I've been on vacation. This looks like a bug, but I'm having trouble reproducing it without seeing the input data set. Would it be possible for you to share it in an obfuscated/reduced form that still reproduces the error?

lixiaopi1985 commented 3 years ago

Thank you for getting back to me. I can't find the data anymore to reproduce the issue, I must have deleted it or over-written it. I'll just close this issue for now.

jtackm commented 3 years ago

Sorry to hear that, feel free to re-open if the issue should arise again.