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meringlab / FlashWeave.jl

Inference of microbial interaction networks from large-scale heterogeneous abundance data
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Use of relative abundances #33

Closed danpal96 closed 1 year ago

danpal96 commented 1 year ago

I have a table generated by the mOTUs program with relative abundances. Can I use Flashweave or FlashweaveHE with relative abundances (range 0 to 1)?

jtackm commented 1 year ago

Yes, you can! CLR normalization (as used by FlashWeave) can be performed on relative abundances, albeit with a potential small loss in numerical precision.