missing taxonomic levels - Githubissues

meringlab / paxdb-orthology-lib

pax-db.org orthology API npm module

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missing taxonomic levels #2

Open mbsimonovic opened 6 years ago

mbsimonovic commented 6 years ago

https://pax-db.org/api/proxy/protein/7955.ENSDARG00000060911/ortholog_groups:

stops at chordates, but there're more Sarcopterygii, Aminiotes, Mammals... https://pax-db.org/protein/1505525, and at CHORDATES returns nothing: https://pax-db.org/api/proxy/protein/7955.ENSDARG00000060911/ortholog_groups/CHORDATES

mbsimonovic commented 6 years ago

this is because taxonomy.js:taxonomicLevels(7955) returns: [ 'LUCA', 'EUKARYOTES', 'OPISTHOKONTS', 'METAZOA', 'COELOMATA', 'CHORDATES' ]

7955/drerio is a chordate so the levels stop there.