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merlyescalona / yagcloser

YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.
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curious what to use for describe-assembly #1

Closed jbh-cas closed 2 years ago

jbh-cas commented 2 years ago

Hello,

Your repo looks like an interesting additional usage of HiFi reads and thought I'd give it a go with some of our hifiasm created assemblies.

I was having trouble determining how to create the gap bed file via describe-assembly -g reference.fasta -B > reference.gaps.bed

I suspect this is something simple I am missing. Any insight appreciated.

best,

Jim Henderson Research Associate, California Academy of Sciences

jbh-cas commented 2 years ago

I see it is in me-bioinf-utilities/src/ thanks