mesoSPIM / mesoSPIM-control

Image acquisition software for mesoSPIM light-sheet microscopes.
http://www.mesospim.org
GNU General Public License v3.0
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Hdf5 support thoroughly tested #47

Closed nvladimus closed 4 years ago

nvladimus commented 4 years ago

Hi, folks, I updated and tested this functionality, it works well on our system: saving into a single H5 file with multiple tiles, channels, downsampling levels, and compression is supported. The H5 files can be open with BigDataViewer, BigStitcher, and Imaris. Please, review before we merge. Thanks!

Changes:

The latest npy2bdv version is required: pip install --upgrade npy2bdv.

Automatic merge with master seems to be OK, the resulting version works.

raacampbell commented 4 years ago

Thanks for this. I will try it soon.

nvladimus commented 4 years ago

I merged into development and close this PR.