messDiv MESS issues - Githubissues

messDiv / MESS

Massive Eco-Evolutionary Synthesis Simulations

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skgarden ModuleNotFoundError

#61 isaacovercast opened 2 years ago
1
2D histogram of pi and TajD

#60 isaacovercast opened 4 years ago
0
phyloTop stats are disabled for now

#59 isaacovercast opened 4 years ago
0
py38 dependency hell

#58 isaacovercast opened 4 years ago
0
API docs not building

#57 isaacovercast opened 4 years ago
0
Integrate metacommunity simulation idea from PIED

#56 isaacovercast opened 4 years ago
0
Error in msprime Out-of-Africa model

#55 jeromekelleher closed 4 years ago
1
Allow to estimate missing data axes from present data axes

#54 isaacovercast opened 4 years ago
0
LocalCommunity._simulate_seqs() - Initial size is broken

#53 isaacovercast opened 4 years ago
0
MESS-worthy datasets

#52 isaacovercast opened 4 years ago
0
Intransitive competition

#51 isaacovercast opened 4 years ago
0
module 'seaborn' required but not present in requirements file

#50 jluiselli closed 4 years ago
1
RoLE-Model WishList Meta-ticket

#49 isaacovercast opened 4 years ago
5
More interesting metacommunity dynamics

#48 isaacovercast opened 4 years ago
0
Implement zeta diversity

#47 isaacovercast opened 4 years ago
0
inference - setting ensemble hyperparameters

#46 isaacovercast closed 4 years ago
1
unpin pandas 0.23.4 when rpy2 3.0 comes out

#45 isaacovercast closed 4 years ago
1
SpatialMESS - Complexity/Entropy plane

#44 isaacovercast opened 5 years ago
0
CV residual plot

#43 isaacovercast opened 5 years ago
0
Implement DummyClassifier/DummyRegressor

#42 isaacovercast opened 5 years ago
0
Positive interactions?

#41 isaacovercast opened 5 years ago
0
Make a new logseries function

#40 isaacovercast opened 5 years ago
0
Have a smarter way of dumping the raw data instead of to a text file per simulation

#39 isaacovercast opened 5 years ago
0
Get all the requirements sorted out

#38 isaacovercast opened 5 years ago
0
More intelligence in how upper bound of pi is fixed

#37 isaacovercast opened 6 years ago
0
Make it optional to write out the simulation directories

#36 isaacovercast closed 6 years ago
1
Add mutation rate and sigma to the params file

#35 isaacovercast closed 6 years ago
2
Add all parameters to the simout file

#34 isaacovercast closed 5 years ago
1
Ensure simulated configuration matches sampled configuration exactly.

#33 isaacovercast opened 6 years ago
0
SGD bin widths?

#32 isaacovercast opened 6 years ago
0
Backwards model for land bridge origin is badly broken.

#31 isaacovercast opened 6 years ago
0
SAD and SGD are both distributions, so why do we treat them differently in the sumstats vector?

#30 isaacovercast closed 5 years ago
1
Processing SGD bins into something different

#29 isaacovercast opened 6 years ago
0
Writing to 1 million small files in directories one per simulation is super annoying

#28 isaacovercast opened 6 years ago
0
Always write out the 2d-sgd?

#27 isaacovercast closed 5 years ago
1
Calculation of the pi values

#26 isaacovercast opened 6 years ago
0
June 5 Mtg Ideas

#25 isaacovercast opened 6 years ago
0
Sometimes you get nans in the megalog file

#24 isaacovercast closed 5 years ago
1
Construct the local phylogeny

#23 isaacovercast opened 6 years ago
0
Hill numbers

#22 isaacovercast closed 5 years ago
2
Sample sigma from a gamma distribution

#21 isaacovercast opened 6 years ago
1
Introduced species

#20 isaacovercast opened 6 years ago
0
Function to estimate local community size range from empirical

#19 isaacovercast opened 6 years ago
0
Why is calculated extinction rate 10% of what it should be?

#18 isaacovercast opened 6 years ago
0
Write to SIMOUT as it progresses

#17 isaacovercast opened 6 years ago
0
LocalCommunity.get_stats() should call Region.get_trait_stats() once

#16 isaacovercast closed 5 years ago
1
species with 0 abundance in making it to simulate_seqs()

#15 isaacovercast closed 5 years ago
1
SIMOUT.txt shouldn't have headers written multiple times

#14 isaacovercast closed 6 years ago
1
Experiment with shutting off colonization

#13 isaacovercast opened 6 years ago
0
Specifying the migration matrix?

#12 isaacovercast opened 6 years ago
0