Open PegahDan opened 1 year ago
I'm glad you got it running and it worked for you! Sorry for the late reply. There was a bit of an issue with the update with the samtools conda version!
1) For the columns, the a_ct is the number of A variants at the loci, etc. 2) The pN/pS ratio is calculated using the method described in Schloissnig et al. 2013 Nature (https://www.nature.com/articles/nature11711) 3) As of now, we do not have bypass method because we want to ensure that the filtering of the datasets was universally applied.
Please let us know if you have any other questions!
Hi @metaGmetapop ! I used your tool on my data (it ran perfectly!) and I have a few questions.
Tanks a lot !