Here is a list (via Marcos) of the current repositories indexed by BioCaddie. The number of datasets in each repo is shown between brackets. This list could be useful for us to identify target repositories that would maximize the number of CEDAR users.
martinjoconnor
commented
5 years ago
Here is a list (via Marcos) of the current repositories indexed by BioCaddie. The number of datasets in each repo is shown between brackets. This list could be useful for us to identify target repositories that would maximize the number of CEDAR users.
UniProt:Swiss-Prot (438,182) GDC (262,293) ClinVar (204,689) ClinicalTrials.gov (200,674) BioProject (155,850) PDB (122,339) Dryad (82,837) ArrayExpress (68,189) Dataverse (60,303) NeuroMorpho.Org (50,356) SRA (43,089) CIL (10,194) ICPSR (9,732) PeerJ (5,146) GEO (4,302) RGD (3,247) Zenodo (3,220) ProteomeXchange (2,777) GEMMA (2,285) PDBe:EMDB (2,109) BMRB (1,490) VectorBase (1,445) NITRCIR (1,391) GND (1,016) NeuroVault:Cols (867) MorphoBank (782) NURSA (477) dbGaP (429) Retina (384) NeuroVault:NIDM (316) LINCS (287) MPD (235) NIDDKCR NIDDK Central Repository (151) Epigenomics (128) TCIA (85) PhysioBank (78) PeptideAtlas (76) openfMRI (55) CTN (51) BGI (45) CVRG (29) YPED (26) NeuroVault:Atlases (18)