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metadatacenter / cedar-submission-server

CEDAR server to handle submissions to metadata repositories
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Incorrect source for Cell Subset field in AIRR template #35

Closed martinjoconnor closed 5 years ago

martinjoconnor commented 5 years ago

The MiAIRR template restricts the value to the Cell Line (CLO) ontology.

This ontology does not have the 'naive B cell' class for example. The Cell Ontology (CL) has this value.

Which ontology should the field use? Answer: CL

Need to update template and possibly instances.

marcosmro commented 5 years ago

See the ontologies recommended by the AIRR community at https://github.com/airr-community/airr-standards/issues/97

marcosmro commented 5 years ago

I have updated the "Cell Subset" field in the MiAIRR template to use the "lymphocyte" branch of CL.

Find the updated template at https://cedar.metadatacenter.org/dashboard?folderId=https:%2F%2Frepo.metadatacenter.org%2Ffolders%2F4e5ce935-03ea-401a-804c-c38160c560f2