@metageni
I apologize for opening threads. I'm running into this issue when assigning a directory with multiple fastq files in there.
Specifying the db did not solve the issue, nor pointing it to the db directory.
(super-focus) [bah29@hpcc3 SUPER-FOCUS-0.30]$ python2 superfocus.py -q /home/bah29/hidden_micro/metagenomics/nonhuman/fastq -dir /home/bah29/hidden_micro/metagenomics/nonhuman/superfocus
SUPER-FOCUS: A tool for agile functional analysis of shotgun metagenomic data
Traceback (most recent call last):
File "superfocus.py", line 760, in <module>
if dbdir.split(".db")[0] == myproject["-db"].split("_")[-1]:
NameError: name 'dbdir' is not defined
metageni
commented
5 years ago
@metageni I apologize for opening threads. I'm running into this issue when assigning a directory with multiple fastq files in there. Specifying the db did not solve the issue, nor pointing it to the db directory.