Closed vinisalazar closed 5 years ago
@vinisalazar thanks for the suggestion. I will include it in the next release.
@vinisalazar I have merged the suggested changes. Thanks!
happy to help. I hope to make time for further contributions even if they are just issues 🙂
Hi,
I was trying to use your program. I installed all the dependencies and had both
blast
anddiamond
installed. However, when I ran thesuperfocus_downloadDB -a <aligner>
command for either aligner, I got an error, and the cause for it was not havingwget
installed.I'm installing SUPER-FOCUS on a Mac computer, therefore
wget
is not installed by default. The default command for downloading in OS X iscurl
.My problem was easily solved by installing
wget
command withbrew
.However, to prevent this problem to future Mac users, I see some potential solutions:
wget
withcurl
in thesuperfocus_downloadDB
script.sys.platform
oros.uname()
to check the operating system and use the appropriate command.wget
installed? If not, you can install it withbrew
." (Least recommended).I'd be happy to contribute with a PR for that.
I also submitted #19 which should help with installation.
bw,
V