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metageni / SUPER-FOCUS

A tool for agile functional analysis of shotgun metagenomic data
GNU General Public License v3.0
22 stars 12 forks source link

Database not found #5

Closed blancaverag closed 6 years ago

blancaverag commented 7 years ago

I am having some issues trying to run SUPER-FOCUS. I get this error when running it, despite having the databases:

python superfocus.py -q prot.faa -dir superfocus_smo/ -o smo -ml 50 -p 1 -a diamond -fast 1 SUPER-FOCUS: A tool for agile functional analysis of shotgun metagenomic data -diamond DB_98 database was not found. Please first run python superfocus__downloadDB.py diamond or choose a DB which exists

I have already tried to rerun superfocus__downloadDB.py and specifically set another database with -db option without luck.

Any idea of what the issue might be? Thank you in advance

blancaverag commented 7 years ago

It seems to be working with rapsearch. Do I need to set something related to the database differently so I can use diamond?

metageni commented 6 years ago

Do I need to set something related to the database differently so I can use diamond?

No, installing the aligner should be all you need.