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metageni / SUPER-FOCUS

A tool for agile functional analysis of shotgun metagenomic data
GNU General Public License v3.0
22 stars 12 forks source link

R duplicated levels #6

Closed ehj000 closed 6 years ago

ehj000 commented 7 years ago

Hi, First of all thanks for a very nice tool.

I am not able to run superfocus_plots.sh on the sample files that are provided with the tool. It seems to be issues with the duplicated levels in factors in R:

[2017-08-29 21:08:57] Starting plotting scripts! [2017-08-29 21:08:57] Note: verbose flag was not set. Error in levels<-(*tmp*, value = if (nl == nL) as.character(labels) else paste0(labels, : factor level [15] is duplicated Calls: factor Execution halted ./superfocus_plots.sh: line 107: error: command not found [2017-08-29 21:09:00] Completed!

Is there a solution to this? Kindly regards Erik Hjerde

metageni commented 6 years ago

Sorry. SUPER-FOCUS does not support the scripts for plotting anymore