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metageni / SUPER-FOCUS

A tool for agile functional analysis of shotgun metagenomic data
GNU General Public License v3.0
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Please, help => ValueError: not enough values to unpack (expected 2, got 0) #61

Closed chulghim closed 2 years ago

chulghim commented 4 years ago

I installed latest version super-focus from github.

Python version 3.7.3 diamon version 0.931

python ./superfocus_app/superfocus.py -q in -dir out -a diamond -t 20 ... .... Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0.423s] Closing the database file... [0s] Deallocating taxonomy... [0s] Total time = 1746.95s Reported 224525228 pairwise alignments, 224526338 HSPs. 13685926 queries aligned. diamond v0.9.31.132 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org

CPU threads: 28

Loading subject IDs... [2020-06-18 04:26:52,727 - INFO] Parsing Alignments Traceback (most recent call last): File "./superfocus_app/superfocus.py", line 375, in File "./superfocus_app/superfocus.py", line 342, in main temp_header = ["Subsystem Level 1", "Subsystem Level 2", "Subsystem Level 3", "Function"] + header_files ValueError: not enough values to unpack (expected 2, got 0)

metageni commented 4 years ago

@chulghim Could you please install it using one of the methods described here (https://github.com/metageni/SUPER-FOCUS#installation). It will add the tool to your path - it makes a big difference.

Also, did you format the database to work with DIAMOND using (https://github.com/metageni/SUPER-FOCUS#database)?

Let me know