After a conda install and then downloading the databases, the command superfocus_downloadDB -a diamond -i clusters/ fails because the output directory (Error: Error opening file in my case$HOME/anaconda3/envs/superfocus/lib/python3.8/site-packages/superfocus_app/db/static/diamond/`) does not exist.
I think superfocus_downloadDB should just make the output directories for the aligner before the call to make the databases.
After a conda install and then downloading the databases, the command
superfocus_downloadDB -a diamond -i clusters/fails because the output directory (Error: Error opening file in my case$HOME/anaconda3/envs/superfocus/lib/python3.8/site-packages/superfocus_app/db/static/diamond/`) does not exist.I think
superfocus_downloadDBshould just make the output directories for the aligner before the call to make the databases.