metageni / SUPER-FOCUS

A tool for agile functional analysis of shotgun metagenomic data
GNU General Public License v3.0
21 stars 12 forks source link

Can´t download databases #81

Closed JennsiS closed 1 year ago

JennsiS commented 1 year ago

Is still giving maintenance for this tool? I would like to use it but I can't download the databases. Are the links still working? Everytime i try to download any of the databases described in the installation documentation, the request time out.

metageni-twist commented 1 year ago

Hi Jenniffer, please download it here

https://drive.google.com/file/d/1jTo2e5UQLkEItRrgTJhOhXZAAUV-ACd7/view?usp=sharing

JennsiS commented 1 year ago

Thanks for answering! I managed to download the database with the link you provide, however, when I run the indicated command superfocus_downloadDB -i -a -c

It gives me the following error. imagen

Is there any other way to configure this database? @metageni-twist

linsalrob commented 1 year ago

I have updated the URLs for the database downloads to a new location. All files should be available.

Rob

On Tue, 25 Oct 2022 at 12:11, Jennifer Sandoval @.***> wrote:

Is still giving maintenance for this tool? I would like to use it but I can't download the databases. Are the links still working?

— Reply to this email directly, view it on GitHub https://github.com/metageni/SUPER-FOCUS/issues/81, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAGMFB4SS2K2O6UZ2KEJJHTWE43EZANCNFSM6AAAAAARNQHC5A . You are receiving this because you are subscribed to this thread.Message ID: @.***>

linsalrob commented 1 year ago

The prebuilt databases should be available as zip files now and the instructions for installing them are here:

https://github.com/metageni/SUPER-FOCUS/blob/master/README.md#downloading-prebuilt-databases

Rob

On Wed, 26 Oct 2022 at 12:07, Jennifer Sandoval @.***> wrote:

Thanks for answering! I managed to download the database with the link you provide, however, when I run the indicated command superfocus_downloadDB -i

-a -c It gives me the following error. [image: imagen] Is there any other way to configure this database? @metageni-twist — Reply to this email directly, view it on GitHub , or unsubscribe . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>
JennsiS commented 1 year ago

Thank you, finally i was able to use the tool. I´m very satisfied with the results. I´m very grateful for your quick response.