metagenlab / mummer2circos

Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments
MIT License
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Cannot install #12

Open peflanag opened 2 years ago

peflanag commented 2 years ago

Hi, I was wondering can someone help me? I can't seem to install the app? Is it cause of eh OS on my iMac?

conda install -c bioconda -c conda-forge mummer2circos Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: | Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. failed

UnsatisfiableError: The following specifications were found to be incompatible with a past explicit spec that is not an explicit spec in this operation (perl-statistics-basic):

The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions

Package perl-exporter conflicts for: perl-number-format -> perl-carp -> perl-exporter perl-carp -> perl-exporter perl-extutils-makemaker -> perl-encode -> perl-exporter perl-exporter

Package perl-threaded conflicts for: perl-scalar-list-utils -> perl-threaded perl-carp -> perl-extutils-makemaker -> perl-threaded perl-statistics-basic -> perl-threaded perl-extutils-makemaker -> perl-threaded

Package perl-extutils-makemaker conflicts for: perl-extutils-makemaker perl-number-format -> perl-carp -> perl-extutils-makemaker perl-carp -> perl-extutils-makemaker

Package perl-scalar-list-utils conflicts for: perl-statistics-basic -> perl-scalar-list-utils perl-scalar-list-utils

Package perl conflicts for: perl-carp -> perl[version='5.22.0.|>=5.26.2,<5.26.3.0a0|>=5.32.1,<6.0a0|>=5.26.2,<5.27.0a0',build=_perl5] mummer2circos -> blast -> perl[version='5.22.0.|>=5.26.2,<5.26.3.0a0|>=5.26.2,<5.27.0a0'] perl-number-format -> perl[version='5.22.0.|>=5.26.2,<5.26.3.0a0|>=5.32.1,<6.0a0',build=_perl5] perl perl-scalar-list-utils -> perl-threaded -> perl=5.22.0 perl-number-format -> perl-carp -> perl[version='>=5.26.2,<5.27.0a0'] perl-extutils-makemaker -> perl-data-dumper -> perl[version='>=5.32.1,<5.33.0a0',build=_perl5] perl-statistics-basic -> perl[version='>=5.32.1,<6.0a0',build=_perl5] perl-extutils-makemaker -> perl[version='5.22.0.|>=5.26.2,<5.26.3.0a0|>=5.26.2,<5.27.0a0|>=5.32.1,<6.0a0',build=_perl5] perl-statistics-basic -> perl-number-format -> perl[version='5.22.0.|>=5.26.2,<5.26.3.0a0|>=5.32.1,<5.33.0a0|>=5.26.2,<5.27.0a0',build=_perl5] perl-scalar-list-utils -> perl[version='>=5.26.2,<5.26.3.0a0|>=5.32.1,<5.33.0a0|>=5.26.2,<5.27.0a0',build=_perl5]

Package perl-carp conflicts for: perl-statistics-basic -> perl-number-format -> perl-carp perl-number-format -> perl-carp perl-carp

Package perl-encode conflicts for: perl-carp -> perl-extutils-makemaker -> perl-encode perl-extutils-makemaker -> perl-encode

Package perl-number-format conflicts for: perl-number-format perl-statistics-basic -> perl-number-format

Package gmp conflicts for: mummer2circos -> blast -> gmp[version='>=6.1.2,<7.0a0'] perl-scalar-list-utils -> libgcc -> gmp[version='>=4.2']The following specifications were found to be incompatible with your system:

Your installed version is: 10.16

peflanag commented 2 years ago

I also tried mamba install mummer2circo and got a simpler output error:

Looking for: ['mummer2circos']

conda-forge/osx-64 Using cache conda-forge/noarch Using cache bioconda/osx-64 Using cache bioconda/noarch Using cache r/osx-64 Using cache r/noarch Using cache pkgs/main/osx-64 No change pkgs/main/noarch No change pkgs/r/osx-64 No change pkgs/r/noarch No change

Pinned packages:

Encountered problems while solving:

Can anyone tell me how I fix it?

Cheers

igumnov-daniel commented 1 year ago

I've received nearly same error messages but with biopython=1.72.*.

Try clean install to new conda env with python3.6 It worked in my case

Rohit-Satyam commented 3 months ago

Same error

mamba create -n mummer2circos -c bioconda -c conda-forge mummer2circos

Looking for: ['mummer2circos']

pkgs/main/linux-64                                   6.3MB @   3.3MB/s  2.1s
pkgs/r/noarch                                                 No change
bioconda/noarch                                      5.3MB @   2.2MB/s  2.6s
pkgs/main/noarch                                   715.1kB @ 270.5kB/s  0.4s
bioconda/linux-64                                    5.6MB @   2.0MB/s  2.9s
conda-forge/noarch                                  15.7MB @   5.3MB/s  3.5s
conda-forge/linux-64                                36.4MB @   8.1MB/s  5.9s
pkgs/r/linux-64                                      1.6MB @ 271.3kB/s  3.5s
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
Could not solve for environment specs
The following package could not be installed
└─ mummer2circos is not installable because it requires
   └─ biopython 1.72.* , which conflicts with any installable versions previously reported.