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metagenlab / zAMP

zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics
https://zamp.readthedocs.io/en/latest/
MIT License
7 stars 4 forks source link

A "Rplots.pdf" at the root of the project directory #2

Closed valscherz closed 5 years ago

valscherz commented 5 years ago

Could be explained by :

I had a similar problem recently after upgrading to R-3.0.3 (yes we're a little behind!). It turns out that palette("default") opens a device now, though it didn't used to.

https://stackoverflow.com/questions/6535927/how-do-i-prevent-rplots-pdf-from-being-generated

valscherz commented 5 years ago

Was a known bug of ggplot, https://github.com/tidyverse/ggplot2/issues/2787, solved by https://github.com/metagenlab/microbiome16S_pipeline/commit/25f6436003238f808839c684988be8c66dfddbf6