search

metagenlab / zAMP

zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics
https://zamp.readthedocs.io/en/latest/
MIT License
7 stars 4 forks source link

Aldex2 transformed clr counts are not giving the expected output #21

Open valscherz opened 4 years ago

valscherz commented 4 years ago

I thought that the ouput of:

aldex_obj <- ALDEx2::aldex.clr(reads = OTU) reads_trfs <- aldex_obj@reads

would give me the output of the clr transformation. Instead, it is giving the input + a constant (0.5)