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metagenlab / zAMP

zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics
https://zamp.readthedocs.io/en/latest/
MIT License
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Key error when running the pipeline from SRA samples + SRA toolkits outdated #38

Closed valscherz closed 2 months ago

valscherz commented 3 months ago 
/home/valentinscherz/bin/microbiome16S_pipeline2/zAMP/rules/1_2_DADA2_ASVs/2_DADA2_denoising.rules:
'SRR6309209'
  File "/home/valentinscherz/bin/microbiome16S_pipeline2/zAMP/Snakefile", line 27, in <module>
  File "/home/valentinscherz/bin/microbiome16S_pipeline2/zAMP/rules/1_2_DADA2_ASVs/2_DADA2_denoising.rules", line 242, in <module>
  File "/home/valentinscherz/bin/microbiome16S_pipeline2/zAMP/rules/1_2_DADA2_ASVs/2_DADA2_denoising.rules", line 229, in sample_list_run_DADA2_stats