Summary

Release to update tool versions, work with latest snakemake and apptainer versions.

Details

`Changes`

ef2d166 Update the pipeline to the latest Snakemake version (8.10.6)
bf0ca40 Update multiQC and cutadapt
afa1f5d Update DADA2, fastQC, picrust2
3d8ea94 Add the Family id during database prep in case multiple gens were remplaced by a spaceholder

`Fixes`

1bbda71 Fix deprecated Bio.Alphabet
083b163 Fixed workflow attribute error for singularity
df44385 aec472c 1ce5a4d Fixed SRA
a13174b Fixed decipher path

valscherz commented 6 months ago

@farchaab thanks ++

In the Readme, there is a link to references that is now broken. It would actually be nice to keep somewhere (github or readthedoc) a list of citations to embedded tools and their version. I have suggested to prepare something like this to @Sedreh for the report. What do you think?

farchaab commented 6 months ago

@valscherz Yeah we can add these tools versions in a file somewhere in docs !

I can also add a rule that prints all tool versions in a file (to do)

metagenlab / zAMP

Release 0.9.19 #40

Summary

Details

`Changes`

`Fixes`