metagenlab / zDB

zDB: comparative bacterial genomics made easy
MIT License
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Add GWAS analyses using Scoary2 #62

Closed njohner closed 4 months ago

njohner commented 4 months ago

With this PR we add views for GWAS for all annotation types.

For now the phenotype is defined by selecting species with the phenotype from a list. There are no other configuration parameters yet. I will add a dedicated form with the possibility to upload a phenotype file in a later PR.

The results are presented in tabular form. Other types of representations will be added separately.

Below an example screenshot for the GWAS analysis view and the box shown in the comparison index views. gwas

gwas_box

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