With this PR we add a new tab to the GWAS results showing the significant hits on the phylegenetic tree.
The first column shows the phenotype, colored as red for present and blue for absent. The other columns show the genes/annotations as blue if absent and matching the trait, and red if present and matching the trait.
Note that there is currently an issue in the calculation of the sensitivity and specificity of genes that are negatively correlated to the trait. I've opened a PR in Scoary-2 to fix this.
For a negatively correlated gene
Checklist
[ ] Changelog entry -> no CL entry
[x] Check that tests still pass
[ ] Add tests for new features and regression tests for bugfixes whenever possible.
With this PR we add a new tab to the GWAS results showing the significant hits on the phylegenetic tree. The first column shows the phenotype, colored as red for present and blue for absent. The other columns show the genes/annotations as blue if absent and matching the trait, and red if present and matching the trait.
Note that there is currently an issue in the calculation of the sensitivity and specificity of genes that are negatively correlated to the trait. I've opened a PR in Scoary-2 to fix this.
For a negatively correlated gene
Checklist