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metagenome-atlas / atlas

ATLAS - Three commands to start analyzing your metagenome data
https://metagenome-atlas.github.io/
BSD 3-Clause "New" or "Revised" License
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Unable to install Atlas 2.9 #597

Closed rjain1990 closed 1 year ago

rjain1990 commented 1 year ago

I am returning with below error about biopython.

(base) user@user:~$ mamba install -y -c bioconda -c conda-forge metagenome-atlas=2.9

              __    __    __    __
             /  \  /  \  /  \  /  \
            /    \/    \/    \/    \

███████████████/ /██/ /██/ /██/ /████████████████████████ / / \ / \ / \ / \ _ / / _/ _/ _/ \ o _, / _/ ___/ ` |/ ███╗ ███╗ █████╗ ███╗ ███╗██████╗ █████╗ ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗ ██╔████╔██║███████║██╔████╔██║██████╔╝███████║ ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║ ██║ ╚═╝ ██║██║ ██║██║ ╚═╝ ██║██████╔╝██║ ██║ ╚═╝ ╚═╝╚═╝ ╚═╝╚═╝ ╚═╝╚═════╝ ╚═╝ ╚═╝

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█████████████████████████████████████████████████████████████

Looking for: ['metagenome-atlas=2.9']

pkgs/main/linux-64 No change conda-forge/noarch No change pkgs/r/noarch No change pkgs/r/linux-64 No change pkgs/main/noarch No change bioconda/noarch 4.1MB @ 1.2MB/s 3.5s bioconda/linux-64 4.5MB @ 822.6kB/s 5.6s conda-forge/linux-64 28.8MB @ 3.0MB/s 10.4s

Pinned packages:

Could not solve for environment specs Encountered problems while solving:

SilasK commented 1 year ago

Is there a reason you don't want to install the latest verion of atlas? v 2.13

rjain1990 commented 1 year ago

No reason at all. Looks like I did not see the latest version of the altas and was trying to install the Atlas using the command given on the github page of atlas. https://github.com/metagenome-atlas/atlas. mamba install -y -c bioconda -c conda-forge metagenome-atlas=2.9 I thought 2.9 was the latest version but I was wrong as 2.13 is the latest one.

Below is the command for installing latest version. conda install -c bioconda -c conda-forge metagenome-atlas

Now I have both version in my system. How do I make version 2.13 to use as default?

SilasK commented 1 year ago

Sorry, I made a dynamic link to the latest version.

Have you seen that I have more extended documentation on how to install and use atlas ? https://metagenome-atlas.readthedocs.io/

Check with atlas --version which version you have finally installed.