Error in rule run_gunc - Githubissues

metagenome-atlas / atlas

ATLAS - Three commands to start analyzing your metagenome data

https://metagenome-atlas.github.io/

BSD 3-Clause "New" or "Revised" License

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Error in rule run_gunc #626

Closed mladen5000 closed 1 year ago

mladen5000 commented 1 year ago

run_gunc exits due to the lack of a series.iteritems method. I will edit the gunc.yaml file to limit pandas to 1.5.1 and see if this fixes it, since this is now deprecated in pandas 2.0.

SilasK commented 1 year ago

Thank you for reporting. This should solve the problem. PR is welcome.

mladen5000 commented 1 year ago

Will do

SilasK commented 1 year ago

Fixed in #629